The stock exhaust looks pretty big and a "high flow" unit would only add noise (assuming you changed the Cat and the Muffler). The factory unit is stainless steel, I definately won't be changing this!
If anyone has a Diesel Unlimited out there, how well do they handle bigger tyres? I have ordered mine with a set of 285/75R16's on it. With experience from GU Patrols (and considering the Power and Torque figures for the CRD exceed the 3 Litre GU TD) I would figure that the JK CRD will push 285's easy with stock ratios?