First up the surprisingly long list of TSB's -
http://project-jk.com/index.php/?cat=20
The one about the leaking Freedom top sounds like a worry - the fix reads like stick in some more foam, bit of sealer here and there and hope for the best.
Like the slapping softtop one - "A loud noise may be heard caused by the soft top slapping against speaker bar while driving at highway speeds." The fix is worthy of a thread in the fugly-fab section. "Stick on some foam" LOL!
The other interesting post is the mopar catalog
http://project-jk.com/index.php/?p=108 - not sure how many will make it here?