08 jk crd, Id put money on the injectors starting to go out of spec, I have already changed 12 jk crd injectors this month. . how many km's on it?
If you have got the low pressure rail warning then its as darren said, the pressure sensors in the rail, I have come across 3 other cars in the past 3 months that have had/having these problems.
But also keep an ear out if the intake pump is priming while it has a failed/delayed start? there has been 2 cases I worked on were the TIMP randomly wouldn't trigger the pick up pump and prime the fuel system, leaving to delayed or long cranking before starting
*fuel filter is on the low pressure side, so even a semi blocked fuel filter won't give of a low pressure warning once, unless its completely blocked and preventing flow, which the car will not run as the high pressure pump would not have enough fuel to maintain pressure (under 2000psi and injectors stop firing)
There is a CRD facebook page where problems like this are posted,
https://www.facebook.com/groups/JKCRDowners/