Dave as far as your air con problem is concerned....check the vacuum pipe coming into the cabin from the intake manifold. In the case of the CRDs this vacuum for the air con flaps comes off a separate vacuum pump.
After taking my CRD to the Dealers for a service I noticed the air flow only coming from the demister vents...maybe foot well as well?
I turned around at once and the Dealers straight away connected the vacuum pipe back onto the vacuum pump where they had knocked it off.
The first Sticky at the top of this page has a link to the Jeep KJ Service Manuals for the various years. Download your year Manual and read up on how the system works!