Gotta be something not quite right there. Do you think its mechanical or software related. Any codes coming up for transmission in Jscan?
Have you used manual mode on the gearshift to drive around? Shift gears with that + - thing in Drive, and therefor you can hold 4th and drop to 3rd when you want and see if it does it at any rpms in that mode. Also try it in 3rd to 2nd and try to emulate what your feeling in when its in full auto mode.
Ours is pretty well silky smooth. We had clunks and bumps before we did the driveshaft and diff bushes.
Was there any software updates for the transmissions?
Have you checked the fluid level yet. Might just need a filter kit and a good flush. Clarky and others recommend a good lubricant for the box.
http://www.ausjeepoffroad.com/forum/...d.php?t=136884
I have bought all 25mm pipe and fittings to do my Provent modification. Pretty sure that hose that goes into the elephant hose is 25mm, but don't quote me. I'm still a few weeks away from that mod, but can go and check over the weekend.
Cheers,
Edit: Upon further research, it looks like you may be on the right track with the adaptive reset. Here is a paste from an article on the correct way to run the vehicle after resetting the transmission.
https://www.lxforums.com/board/trans...sher-info.html
TCM ADAPTATION - NAG1 Only
The adaptation procedure requires the use of the appropriate scan tool. This program allows the electronic transmission system to re-calibrate itself. This will provide the proper baseline transmission operation. The adaptation procedure should be performed if any of the following procedures are performed:
1. Transmission Assembly Replacement
2. Transmission Control Module Replacement
3. Clutch Plate and/or Seal Replacement
4. Electro-hydraulic Unit Replacement or Recondition
1. With the scan tool, reset the Transmission adaptive's. Resetting adaptive's will set the adaptive's to factory settings.
NOTE:
For Upshift adaptation, the Transmission temperature must be greater than 60�C (140�F) and less than 100�C (212�F). Failure to stay within these temperature ranges will void this procedure.
2. Drive the vehicle until the transmission temperature is in the specified range.
3. Perform 4 to 5 coast downs from 5th to 4th gear and then 4th to 3rd gear.
4. From a stop, moderately accelerate the vehicle and obtain all forward gear ranges while keeping the Engine RPM below 1800 RPM. Repeat this procedure 4 to 5 times.
5. Obtaining 5th gear may be difficult at 1800 RPM. Allow transmission to shift into 5th gear at a higher RPM then lower the RPM to 1800 and perform manual shifts between 4th and 5th gears using the shift lever.
6. The TCM will store the adaptive's every 10 minutes. After completion of the adaptation procedure make sure the vehicle stays running for at least 10 minutes.
7. It is possible to manually store the adaptive's under the 10 minute time frame using the scan tool Store Adaptive's procedure.