Mate I would look after a few typical issue then get into the mods.
Firstly do the cooling system, upgrade radiator, electric fan and new hoses all round, then I would look at the steering and replace the ball joints or just upgrade to HD steering system (I would recommend the Iron rock OTT, not much more than what you will be charged for a HD system here but 100 times better and gets rid of the stupid inverted "Y" system). Windscreen seal and cowl seal will have probably gone as well, they are cheap so chuck them in you OS order. Hubs are also cheap so I would replace while doing the steering, this will ensure the only thing left to create the wondering is the steering box and hopefully yours does not have much slop. Injector upgrade to 4 hole is also worth doing as the seals on your injects are probably near ready to start failing, yes you can by the new seals for less than new injects but seeing as you are there why not upgrade.
As for upgrades sounds like you got the basics, adjustable arms and bushing first (get a LR kit, makes the ride so much more comfortable especially if you decide to lift more than 2"), then springs and shocks, I suggest replacing all the bar pin shock mounts to standard eyelet while you are doing the shocks.
If you are going to go bigger tyres then I would budget for diff gears front and rear unless you don't intend on driving the jeep on the road or going very fast (lol, jeep and fast in the same sentence), do this at the same time as putting in lockers , just don't use crappy ARB lockers, In fact the lockers will probably the biggest impact/upgrade to your off-road experience.
Some other upgrades worth doing include
- Rear disc brakes
- Front diff HP30 change over
- Sleeve for front diff
- Lower & upper arm mount bracing
- Front sway bar disconnects
- Rear sway bar upgrade with disconnect
- SYE (you can get kits with the shafts which save you tons)
- Tomwoods drive shafts
- Long range fuel tank
- U-bolt yoke upgrade
- UHF
- Light bar
If you plan on taking off-road then you might want to think about some basic trail armour like rock sliders, front bull bar and winch and a rear bar with tyre carrier (your rear door will not like you mounting larger tyres to it), the list can go on forever it is a jeep after all